The converter preserves identifiers and expression values and removes any column or row that maps clustering tree relationships.ĬDT to TAB converts the CDT output file from GenePattern's HierarchicalClustering module to Genomica TAB format. In response to user requests we have added the following three new format converters to the GenomeSpace ecosystem.ĬDT to GCT converts the CDT (cluster data table) output file from GenePattern's HierarchicalClustering module to GenePattern's more widely used GCT format. Posted by Ted Liefeld on Wednesday, Maat 10:13AM
Cytoscape 3.2.1 how to#
How to use the Recipe Resource and recipes.Several guides describe the new resource and help you get started. The new resource also introduces a new look and an improved interface for searching for recipes. We invite you to contribute your own analysis recipes and add your comments and votes to other recipes. The GenomeSpace team is pleased to announce a new GenomeSpace Recipe Resource website.Īll members of the GenomeSpace community can now author and share recipes with each other.
Posted by Ted Liefeld on Monday, Februat 01:38PM Announcing the New GenomeSpace Recipe Resource
We will be hosting more orientation webinars soon, so if you missed this round, there will be another chance! Check out the GenomeSpace Calendar of Events for upcoming webinar, office hours, and other outreach events. The webinar will be recorded and the link will be posted, for those that are unable to attend the live session. Space for the GenomeSpace Orientation Webinar is now filled. The first GenomeSpace orientation webinar will be held February 29, 2016, from 2:00-3:00PM EST (19:00-20:00 UTC/GMT). Posted by Sara Garamszegi on Thursday, Februat 11:30AM The GenomeSpace Recipe Resource will be unavailable on Friday March 11th from 10-11 PST while it undergoes scheduled maintenance. Posted by Ted Liefeld on Wednesday, Maat 09:35AM While you're there, check out our recipe videos and other helpful guides.įor future reference, links to webinar recordings will be made available in the webinar event descriptions on the GenomeSpace calendar. If you missed the webinar, don't worry! A recording of the webinar is available on our YouTube channel. Thank you to those of you who joined us for our GenomeSpace webinar last week (Feb 29, 2016). Posted by Felix Wu on Thursday, Maat 04:47PM See the FireBrowse Tool Guide to learn how to start using FireBrowse. FireBrowse is developed at The Broad Institute of MIT and Harvard. Developed for The Cancer Genome Atlas (TCGA), and backed by a powerful compute infrastructure, programming interface, online reports and modern graphical tools, FireBrowse provides a simple yet capable means of visually and programmatically exploring one of the most comprehensive and deeply-characterized open cancer datasets in the world. GenomeSpace is proud to announce the addition of a new data resource to the GenomeSpace tool catalog: FireBrowse.įireBrowse is a companion portal to the Broad Institute GDAC Firehose analysis pipeline. Posted by Michael Noble, Sam Meier, Ted Liefeld, and Sara Garamszegi on Friday, Apat 11:59AM If you missed the webinar, don't worry! A recording of the webinar is available on our YouTube channel. Thank you to those of you who joined us for our GenomeSpace recipe webinar on June 27, 2016. Posted by Sara Garamszegi on Wednesday, Jat 11:16AM
As a part of this, we will be doing a live demonstration of running a recipe in GenomeSpace. We will cover what a recipe is, how to search for recipes of interest, how to use a recipe, and how to create your own recipes. In this webinar, we will walk users through the GenomeSpace User Interface (GSUI) and introduce users to the GenomeSpace Recipe Resource. Posted by Sara Garamszegi on Monday, Septemat 10:14AMĪ GenomeSpace orientation webinar will be held October 24, 2016, from 2:00-3:00PM EDT (18:00-19:00 UTC/GMT).
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